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InterPro Inc protein signature databases
Protein Signature Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+signature+database/protein+signature+databases/pmc12108012-145-4-1
Average 90 stars, based on 1 article reviews
protein signature databases - by Bioz Stars, 2026-09
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Article Title: Genome sequence of Acremonium strictum AAJ6 strain isolated from the Cerrado biome in Brazil and CAZymes expression in thermotolerant industrial yeast for ethanol production
Article Snippet: Journal Pre-proof Genome sequence of Acremonium strictum AAJ6 strain isolated from the Cerrado biome in Brazil and CAZymes expression in thermotolerant industrial yeast for ethanol production Alberto Moura Mendes Lopes, Allan Henrique Felix Mello, Dielle Pierroti Procópio, Gleidson Silva Teixeira, Marcelo F. Carazzolle, Lucas Miguel de Carvalho, Núria Adelantado, Gonçalo A.G. Pereira, Pau Ferrer, Francisco Maugeri Filho, Rosana Goldbeck PII: S1359-5113(20)30527-4 DOI: https://doi.org/10.1016/j.procbio.2020.07.029 Reference: PRBI 12108 To appear in: Process Biochemistry Received Date: 1 April 2020 Revised Date: 26 July 2020 Accepted Date: 31 July 2020 Please cite this article as: Mendes Lopes AM, Felix Mello AH, Procópio DP, Teixeira GS, Carazzolle MF, de Carvalho LM, Adelantado N, Pereira GAG, Ferrer P, Filho FM, Goldbeck R, Genome sequence of Acremonium strictum AAJ6 strain isolated from the Cerrado biome in Brazil and CAZymes expression in thermotolerant industrial yeast for ethanol production, Process Biochemistry (2020), doi: https://doi.org/10.1016/j.procbio.2020.07.029 This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record.. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article.. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.

Article Title: Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing
Article Snippet: Protein domains of the Chinese fir DCLs were analyzed by scanning them against the InterPro protein signature database ( http://www.ebi.ac.uk/InterProScan ).

Article Title: Bioinformatics and computational analyses of kidney stone modulatory proteins lead to solid experimental evidence and therapeutic potential.
Article Snippet: InterPro (https://www.ebi.ac.uk/interpro/search/sequence/) can be applied for searching the protein domains and important sites against the InterPro protein signature database (http://www.ebi.ac.uk/ interpro/) [18].

Article Title: Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses
Article Snippet: To identify the proteins encoded by deep-sea RNA viruses, the ORFs predicted from the deep-sea vOTUs in this study were annotated by (1) blast hit analysis against the Kyoto encyclopedia of genes and genomes (KEGG) database , (2) blast against the UniProt Reference Clusters database , (3) searching for matches against the InterPro protein signature database using InterProScan and (4) HMM searches against Pfams .

Article Title: Characterization of a novel thermostable (S)-amine-transaminase from an Antarctic moderately-thermophilic bacterium Albidovulum sp. SLM16.
Article Snippet: Amine-transaminases (ATAs) are enzymes that catalyze the reversible transfer of an amino group between primary amines and carbonyl compounds.. They have been widely studied in the last decades for their application in stereoselective synthesis of chiral amines, which are one of the most valuable building blocks in pharmaceuticals manufacturing.. Their excellent enantioselectivity, use of low-cost substrates and no need for external cofactors has turned these enzymes into a promising alternative to the chemical synthesis of chiral amines.

Article Title: An Unwanted Association: The Threat to Papaya Crops by a Novel Potexvirus in Northwest Argentina
Article Snippet: In addition, the InterPro protein signature database was also used ( https://www.ebi.ac.uk/interpro/search/sequence/ , accessed on 10 October 2022).

Sequencing:

Article Title: Genome wide annotation and characterization of young, intact long terminal repeat retrotransposons (In-LTR-RTs) of seven legume species.
Article Snippet: Availability of genome sequence of different legume species has provided an opportunity to characterize the abundance, distribution, and divergence of canonical intact long terminal retrotransposons (In-LTR-RT) superfamilies.. Among seven legume species, Arachis ipaensis (Aip) showed the highest number of full-length canonical In-LTR-RTs (3325), followed by Glycine max (Gma, 2328), Vigna angularis (Van, 1625), Arachis durensis (Adu, 1348), Lotus japonicus (Lja, 1294), Medicago truncatula (Mtr, 788), and Circer arietinum (Car, 124).. Divergence time analysis demonstrated that the amplification timeframe of LTR-RTs dramatically varied in different families.

Comparison:

Article Title: Environmental viromes reveal global virosphere of deep-sea RNA viruses
Article Snippet: .. 598 Identification and comparison of the proteins encoded by vOTUs of deep-sea 599 RNA viruses 600 To identify the proteins encoded by deep-sea RNA viruses, the ORFs predicted 601 from deep-sea vOTUs in this study were annotated by (1) blast hit analysis against the 602 Kyoto encyclopedia of genes and genomes (KEGG) database44, (2) blast against the 603 UniProt Reference Clusters database45, (3) searching for matches against the InterPro 604 protein signature database using InterProScan46 and (4) HMM searches against 605 Pfams47. ..



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